Integrative Biology | Meyer Lab

Annotated reference transcriptome assemblies

This page provides access to a collection of annotated transcriptome assemblies developed through collaborations with the Weis lab, Demian Willette, and other colleagues. These resources reflect a catalog of the genes expressed in each species, and may be broadly useful for sequence comparisons, qPCR, or other gene-specific studies.

Information is free in the internet age, making restrictive usage agreements inappropriate. These data are freely available without restrictions or guarantees. We only ask that you email us a quick note about your plans for using these data in a publication. Enjoy!

Species Resource Access Last updated
Anthopleura elegantissima Transcriptome assembly v1.0 Download Search May 10, 2014
Fungia scutaria Transcriptome assembly v1.0 Download Search May 10, 2014
Halophila stipulacea Normalized transcriptome, assembly v1.0 Download Search May 10, 2014
Madracis auretenra Normalized transcriptome, assembly v1.0 Download Search Feb 10, 2014
Montastraea cavernosa Transcriptome assembly v1.0 Download Search May 10, 2014
Platygyra daedalea Normalized transcriptome, assembly v1.0 Download Search Feb 14, 2015
Pseudodiploria strigosa Normalized transcriptome, assembly v1.0 Download Search May 19, 2014
Seriatopora hystrix Transcriptome, assembly v1.0 Download Search May 10, 2014

Raw sequence data

This section links to raw sequence data we have archived at NCBI's Sequence Read Archive.

Species Description of dataset SRA accessions
Anthopleura elegantissima Paired-end Illumina HiSeq reads from cDNA of an aposymbiotic specimen SRR2300240
Fungia scutaria Paired-end Illumina HiSeq reads from cDNA of a pooled sample of aposymbiotic larvae SRR2300562
Seriatopora hystrix Paired-end Illumina HiSeq reads from cDNA of a single adult specimen SRR2300678
Montastraea cavernosa Paired-end Illumina HiSeq reads from cDNA of a single adult specimen SRR2306543
Platygyra daedalea Single-end Illumina HiSeq reads of 2bRAD sequencing libraries from adult specimens PRJNA302770
Platygyra daedalea Single-end Illumina HiSeq reads of 2bRAD sequencing libraries from individual larvae. Originally produced with the goal of linkage analysis, these libraries produced insufficient coverage for that purpose. Instead, they remain useful as a reference for mapping data from P. daedalea. PRJNA302771
Orbicella faveolata Single-end Illumina HiSeq reads of 2bRAD sequencing libraries from individual adult colonies used for a small-scale association study. Project | Data
Orbicella faveolata Single-end Illumina HiSeq reads of 2bRAD sequencing libraries from individual larvae, used for a genetic linkage map. Project | Data
Orbicella faveolata Single-end Illumina HiSeq reads of 2bRAD sequencing libraries from parental colonies used in crosses used to produce mapping population for linkage analysis. Project | Data
Platygyra dadaelea Single-end Illumina HiSeq reads of 2bRAD sequencing libraries from individual larvae and their parents, used for a genetic linkage map. PRJNA397297

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